I'm working on insertions in the human genome, and what I would like to do is: take a bit of sequence that contains an insertion and use it as the reference that I can then align the human reference back to. This would show the alignment of the reference back to the insertion with the *de novo*sequence in between.
In essence, can I load in my own reference? Best _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
