Joses, Our hg18.knownCanonical table might be what you're looking for. This table describes the canonical splice variant of a gene.
Please see this previously answered mailing list question: http://www.soe.ucsc.edu/pipermail/genome/2008-January/015274.html I hope this is helpful to you. Please don't hesitate to contact us again if you require further assistance. Kayla Smith UCSC Genome Bioinoformatics Group Joses HO Wei-Hao wrote: > Hi, > > I have a genomic region of interest, and I want to extract all the exon > coordinates for sequence capture. The annotation database I want to use is > the UCSC Known Genes database. > > However, it seems to me that the Known Genes database contains splice > variants for several genes. I just want the start and stop coordinates of all > exons (both coding and non-coding, and both known and novel) within my region > of interest, without any duplicated exons. Any idea on how this can be done? > > Thanks, > Joses > _______________________________________________ > Genome maillist - [email protected] > http://www.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
