Hi, I'm trying to create a track of aligned Illumina sequencing reads. Currently I am using a .BED file, but I am having trouble with displaying the mismatches in those alignments. I would like to have them look just like the BLAT alignment results, where mismatches have a changed base, and indels are shown. However, the PSLX format does not seem to be supported. I noticed that the BLAT results are a combination of a .FA file and and a .PSL file. Is there any support for creating combining these files, outside of using BLAT?
Thanks, Jeremy _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
