pslCDnaFilter and pslReps may also be useful. -Galt
On Fri, 9 Jan 2009, Hiram Clawson wrote: > Good Morning Davide: > > As you have probably noticed, there are many psl utilities constructed > from the source tree. Take a look at pslSort and pslFilter > > --Hiram > > Davide Cittaro wrote: >> Hi there, following the previous mail about utilities, is there a way >> (command or pipeline) to get the best match for each query from a psl >> output given by gfClient? >> I've noticed that while hgBlat sorts results by descending goodness of >> match, gfClient doesn't. Of course, I can use custom scripts to sort/ >> filter, but it would be nice to use some of your utilities... >> >> Davide Cittaro > _______________________________________________ > Genome maillist - [email protected] > http://www.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
