Hello, I am using table snp129 from Variants and Repeats in hg18 and
I have a question about in-dels.
The paper by Mills et al Genome Res. 2006. 16: 1182-1190
http://genome.cshlp.org/content/16/9/1182.full identified 415,436 unique
INDEL polymorphisms that were deposited in dbSNP in 2006.
Why aren't they in UCSC's table snp129? I only found ~200,000 in the
file. (grep in-del snp129 | wc) and about 12 million SNPs, which seems
to be current with dbSNP.
Two examples are presented below, they are in current NCBI's dbSNP,
but not in file snp129 downloaded from UCSC.
rs36233812
rs36233828
Thanks for your help!
Noboru
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