Hello Shoa, Thank you for pointing out this example. We are currently looking into it and we will get back to you when it is resolved. In the meantime, if you have any other questions about the genome browser, please don't hesitate to contact us again.
Kayla Smith UCSC Genome Bioinformatics Group Lee Shoa Long Clarke wrote: > Hi, > > I've been observing some strange behavior when using the netFilter tool. > I've run the tool with many sets of nets, with and without the -minSizeQ > flag. When I use the flag, the resulting nets fill in many gaps as aligning > blocks. In other words, the nets are actually altered by the flag. The > higher I set -minSizeQ, the more filled the nets become. > > For example, if I take the fr2 nets from the hg18 browser and run: > > netFilter -minSizeQ=1000 hg18.fr2.net.gz > hg18.fr2.filter.net > > The resulting nets will show huge blocks of alignment, filling in what were > gaps in the original nets. > > Any help is much appreciated. > > Thanks! > Shoa > > _______________________________________________ > Genome maillist - [email protected] > http://www.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
