Hello João Fadista, You will need the 2bit files (or sequence in some format) for the assemblies you are converting to/from and you will also need to download and run our liftOver utility. You can find the stand-alone liftOver utility here:
http://hgdownload.cse.ucsc.edu/admin/exe/ For additional help in obtaining and installing it please consult this previously answered mailing list question: http://www.soe.ucsc.edu/pipermail/genome/2008-August/016898.html You can find specific instructions on using our liftOver utility to perform lifts between assemblies that we do not have here: http://genomewiki.cse.ucsc.edu/index.php/Minimal_Steps_For_LiftOver This is a stripped down version of the complete instructions for the liftOver tool found here: /kent/src/hg/doc/liftOver.txt Hopefully this information was helpful and answers your question. If you have further questions or require clarification feel free to contact the mailing list at [email protected]. Best regards, Pauline Fujita UCSC Genome Bioinformatics Group http://genome.ucsc.edu João Fadista wrote: > Hi, > > I would like to know what do I have to do, to be able to use the liftover > program for converting genomic coordinates between 2 assemblies of the same > mammal specie that is not yet available at ucsc? > > > Cheers, > João Fadista > _______________________________________________ > Genome maillist - [email protected] > http://www.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
