Good Morning Brian: This depends upon your shell environment PATH setting. It is a good idea from a security point of view to use a PATH setting without the cwd . in the PATH. When it is like this, you would need to run a command as ./liftOver if it hasn't been placed in one of the bin directories that is in your PATH. If you place the liftOver command in one of your bin directories, you will not need to use ./liftOver
See also: http://en.wikipedia.org/wiki/Environment_variable and: http://en.wikipedia.org/wiki/Path_(computing) --Hiram Brian Cox wrote: > Maybe you could change the instruction for running the liftOver tool > to ./liftOver as just typing liftOver won't work. > Thanks > Brian _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
