Hi Mera, There is no standard (yet) developed for the exchange of data such as SNPs. We incorporate data from multiple sources, each having a different format, transforming them into our own format. One option for you is to use our standardized imported data and then create custom tracks using our tools to view your data in our browser along with the rest.
Our SNP data can be found in "Variation and Repeats" track groupings within genomic assemblies. Click on the track descriptions to see the data sources and formating information. For example, in the Human 2006 assembly, there is a track called "SNPs (129)". This track contains dbSNP build 129, available from ftp.ncbi.nih.gov/snp If creating a custom track appeals to you, here is a link to our FAQ: http://genome.ucsc.edu/FAQ/FAQcustom Also, one of our developers passed along a link to me that you may find interesting/helpful: http://www.humgen.nl/SNP_databases.html Thank you, Jennifer Jackson UCSC Genome Bioinformatics Group Mera Vigyan wrote: > good morning, > > i would like to know whether there exists any tools for visualization & data > exchange of genomic data > like structural variations, snps etc .. something like a markup language / > schema for representation > of genome data and genomic variations. > > thank you > Mera > _______________________________________________ > Genome maillist - [email protected] > http://www.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
