Hello, The coordinates we use for the database (refFlat is a text file used by the database) are formatted to aid with calculations. Here is some documentation explaining: http://genome.ucsc.edu/FAQ/FAQtracks#tracks1
Thank you, Jennifer Jackson UCSC Genome Bioinformatics Group chenna wrote: > Hello > > The genomic coordinates of CDS for NM_001006933 from refFlat is given > as 102750648, 102751251 > For the same CDS BLAT output coordinates are 102750649, 102751251 > (CDS start is offset by one). > Wasn't that an error? Could you pl clarify. > > Thanks > CR > > _______________________________________________ > Genome maillist - [email protected] > http://www.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
