Hello, I am unable to duplicate because that I do not have access to all the data referenced in your link. One thing to try is clearing your cart and starting the query/display over: http://genome.ucsc.edu/cgi-bin/hgGateway use the link here "Click here to reset the browser user interface settings to their defaults."
If you still having problems with this page loading completely, please let us know what browser/OS you are using. Also send any custom tracks/data that would be required to duplicate the data (send directly to me, not the mailing list). I will try the query and investigate the problem. Jennifer Jackson UCSC Genome Bioinformatics Group Ross Lazarus wrote: > Help please! I've been using GG from Galaxy for about 2 years but today, when > I > went to make some nice pictures for my grant renewal (!), there appears to be > a > new problem. > > Using a Galaxy constructed url like this: > http://genome.ucsc.edu/cgi-bin/hgGenome?db=hg18&hgGenome_dataSetName=Plink%20sample%20wga%20data%20case%20control%20_CaCo_gg.track&hgGenome_dataSetDescription=GalaxyGG_data&hgGenome_formatType=best%20guess&hgGenome_markerType=best%20guess&hgGenome_columnLabels=first%20row&hgGenome_maxVal=&hgGenome_labelVals=&hgGenome_maxGapToFill=25000000&hgGenome_uploadFile=http%3A%2F%2Fgalaxy.esphealth.org%2Fdisplay_as%3Fid%3D477%26display_app%3Ducsc&hgGenome_doSubmitUpload=submit > > the data appear to upload fine, but the page that tells me how many snp and > where they mapped does not show the usual button to proceed to view the > karyotype, and when I view the page source, it is clearly truncated in the > middle of the form that usually shows that button - here's the source for the > UCSC page I'm getting after uploading (apparently successfully!) - note where > it > ends - and no closing body or html tags: > > ====================source========================================================= > <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 3.2//EN"> > <HTML> > <HEAD> > > > <META HTTP-EQUIV="Content-Type" CONTENT="text/html;CHARSET=iso-8859-1"> > <META http-equiv="Content-Script-Type" content="text/javascript"> > <META HTTP-EQUIV="Pragma" CONTENT="no-cache"> > <META HTTP-EQUIV="Expires" CONTENT="-1"> > <TITLE> > Data Upload Complete (62 bytes) </TITLE> > <LINK REL="STYLESHEET" HREF="../style/HGStyle.css" TYPE="text/css"> > > </HEAD> > <BODY BGCOLOR="#FFF9D2" LINK="#0000CC" VLINK="#330066" ALINK="#6600FF"><A > NAME="TOP"></A> > > <TABLE BORDER=0 CELLPADDING=0 CELLSPACING=0 WIDTH="100%"> > > <!-- +++++++++++++++++++++ HOTLINKS BAR +++++++++++++++++++ --> > <TR><TD COLSPAN=3 HEIGHT=40 > > <table bgcolor="#000000" cellpadding="1" cellspacing="1" width="100%%" > height="27"> > <tr bgcolor="#2636D1"><td valign="middle"> > <table BORDER=0 CELLSPACING=0 CELLPADDING=0 bgcolor="#2636D1" > height="24"><TR> > <TD VALIGN="middle"><font color="#89A1DE"> > > <A HREF="../index.html?org=Human&db=hg18&hgsid=1605988" class="topbar"> > Home</A> > <A HREF="../cgi-bin/hgGateway?org=Human&db=hg18&hgsid=1605988" > class="topbar"> > Genomes</A> > <A > HREF="../cgi-bin/hgBlat?command=start&org=Human&db=hg18&hgsid=1605988" > class="topbar"> Blat</A> > <A > HREF="../cgi-bin/hgTables?org=Human&db=hg18&hgsid=1605988&hgta_doMainPage=1" > class="topbar"> > Tables</A> > <A HREF="../cgi-bin/hgNear?org=Human&db=hg18&hgsid=1605988" > class="topbar"> > Gene Sorter</A> > <A HREF="../cgi-bin/hgPcr?org=Human&db=hg18&hgsid=1605988" > class="topbar"> > PCR</A> > <A > HREF="../cgi-bin/hgGenome?org=Human&db=hg18&hgsid=1605988&hgGenome_doPsOutput=on" > > class="topbar"> > PDF/PS</A> > <A > HREF="../cgi-bin/hgSession?org=Human&db=hg18&hgsid=1605988&hgS_doMainPage=1" > class="topbar">Session</A> > <A HREF="../FAQ/" class="topbar"> > FAQ</A> > > <A HREF="../goldenPath/help/hgGenomeHelp.html" > class="topbar"> > Help</A> > </font></TD> > </TR></TABLE> > </TD></TR></TABLE> > </TD></TR> > > > <!-- +++++++++++++++++++++ CONTENT TABLES +++++++++++++++++++ --> > <TR><TD COLSPAN=3> > <!--outer table is for border purposes--> > <TABLE WIDTH="100%" BGCOLOR="#888888" BORDER="0" CELLSPACING="0" > CELLPADDING="1"><TR><TD> > <TABLE BGCOLOR="#FFFEE8" WIDTH="100%" BORDER="0" CELLSPACING="0" > CELLPADDING="0"><TR><TD> > <TABLE BGCOLOR="#D9E4F8" BACKGROUND="../images/hr.gif" > WIDTH="100%"><TR><TD> > <FONT SIZE="4"><b> > Data Upload Complete (62 bytes)</b></FONT></TD></TR></TABLE> > <TABLE BGCOLOR="#FFFEE8" WIDTH="100%" CELLPADDING=0><TR><TH > HEIGHT=10></TH></TR> > <TR><TD WIDTH=10> </TD><TD> > > > <FORM ACTION="../cgi-bin/hgGenome"><INPUT TYPE=HIDDEN NAME="hgsid" > VALUE="1605988">Loaded 15625346 elements from snp129 table for mapping.<BR> > Mapped 226064 of 228694 (98.8%) of markers<BR> > > ====================source ends here =================================== > > > _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
