Hello Ross, We have isolated your problem and are in the process of implementing/testing the fix. Meanwhile, you are welcome to use/test along with us at http://genome-test.cse.ucsc.edu/
Please let us know if you have any problems or observations, Jennifer Jackson UCSC Genome Bioinformatics Group Ross Lazarus wrote: > Help please! I've been using GG from Galaxy for about 2 years but today, when > I > went to make some nice pictures for my grant renewal (!), there appears to be > a > new problem. > > Using a Galaxy constructed url like this: > http://genome.ucsc.edu/cgi-bin/hgGenome?db=hg18&hgGenome_dataSetName=Plink%20sample%20wga%20data%20case%20control%20_CaCo_gg.track&hgGenome_dataSetDescription=GalaxyGG_data&hgGenome_formatType=best%20guess&hgGenome_markerType=best%20guess&hgGenome_columnLabels=first%20row&hgGenome_maxVal=&hgGenome_labelVals=&hgGenome_maxGapToFill=25000000&hgGenome_uploadFile=http%3A%2F%2Fgalaxy.esphealth.org%2Fdisplay_as%3Fid%3D477%26display_app%3Ducsc&hgGenome_doSubmitUpload=submit > > the data appear to upload fine, but the page that tells me how many snp and > where they mapped does not show the usual button to proceed to view the > karyotype, and when I view the page source, it is clearly truncated in the > middle of the form that usually shows that button - here's the source for the > UCSC page I'm getting after uploading (apparently successfully!) - note where > it > ends - and no closing body or html tags: > > ====================source========================================================= > <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 3.2//EN"> > <HTML> > <HEAD> > > > <META HTTP-EQUIV="Content-Type" CONTENT="text/html;CHARSET=iso-8859-1"> > <META http-equiv="Content-Script-Type" content="text/javascript"> > <META HTTP-EQUIV="Pragma" CONTENT="no-cache"> > <META HTTP-EQUIV="Expires" CONTENT="-1"> > <TITLE> > Data Upload Complete (62 bytes) </TITLE> > <LINK REL="STYLESHEET" HREF="../style/HGStyle.css" TYPE="text/css"> > > </HEAD> > <BODY BGCOLOR="#FFF9D2" LINK="#0000CC" VLINK="#330066" ALINK="#6600FF"><A > NAME="TOP"></A> > > <TABLE BORDER=0 CELLPADDING=0 CELLSPACING=0 WIDTH="100%"> > > <!-- +++++++++++++++++++++ HOTLINKS BAR +++++++++++++++++++ --> > <TR><TD COLSPAN=3 HEIGHT=40 > > <table bgcolor="#000000" cellpadding="1" cellspacing="1" width="100%%" > height="27"> > <tr bgcolor="#2636D1"><td valign="middle"> > <table BORDER=0 CELLSPACING=0 CELLPADDING=0 bgcolor="#2636D1" > height="24"><TR> > <TD VALIGN="middle"><font color="#89A1DE"> > > <A HREF="../index.html?org=Human&db=hg18&hgsid=1605988" class="topbar"> > Home</A> > <A HREF="../cgi-bin/hgGateway?org=Human&db=hg18&hgsid=1605988" > class="topbar"> > Genomes</A> > <A > HREF="../cgi-bin/hgBlat?command=start&org=Human&db=hg18&hgsid=1605988" > class="topbar"> Blat</A> > <A > HREF="../cgi-bin/hgTables?org=Human&db=hg18&hgsid=1605988&hgta_doMainPage=1" > class="topbar"> > Tables</A> > <A HREF="../cgi-bin/hgNear?org=Human&db=hg18&hgsid=1605988" > class="topbar"> > Gene Sorter</A> > <A HREF="../cgi-bin/hgPcr?org=Human&db=hg18&hgsid=1605988" > class="topbar"> > PCR</A> > <A > HREF="../cgi-bin/hgGenome?org=Human&db=hg18&hgsid=1605988&hgGenome_doPsOutput=on" > > class="topbar"> > PDF/PS</A> > <A > HREF="../cgi-bin/hgSession?org=Human&db=hg18&hgsid=1605988&hgS_doMainPage=1" > class="topbar">Session</A> > <A HREF="../FAQ/" class="topbar"> > FAQ</A> > > <A HREF="../goldenPath/help/hgGenomeHelp.html" > class="topbar"> > Help</A> > </font></TD> > </TR></TABLE> > </TD></TR></TABLE> > </TD></TR> > > > <!-- +++++++++++++++++++++ CONTENT TABLES +++++++++++++++++++ --> > <TR><TD COLSPAN=3> > <!--outer table is for border purposes--> > <TABLE WIDTH="100%" BGCOLOR="#888888" BORDER="0" CELLSPACING="0" > CELLPADDING="1"><TR><TD> > <TABLE BGCOLOR="#FFFEE8" WIDTH="100%" BORDER="0" CELLSPACING="0" > CELLPADDING="0"><TR><TD> > <TABLE BGCOLOR="#D9E4F8" BACKGROUND="../images/hr.gif" > WIDTH="100%"><TR><TD> > <FONT SIZE="4"><b> > Data Upload Complete (62 bytes)</b></FONT></TD></TR></TABLE> > <TABLE BGCOLOR="#FFFEE8" WIDTH="100%" CELLPADDING=0><TR><TH > HEIGHT=10></TH></TR> > <TR><TD WIDTH=10> </TD><TD> > > > <FORM ACTION="../cgi-bin/hgGenome"><INPUT TYPE=HIDDEN NAME="hgsid" > VALUE="1605988">Loaded 15625346 elements from snp129 table for mapping.<BR> > Mapped 226064 of 228694 (98.8%) of markers<BR> > > ====================source ends here =================================== > > > _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
