Hello, This particular enzyme is not yet present as part of our Restr Enzymes track (Restriction Enzymes from REBASE). We are in the process of getting this updated. Also, restriction enzymes are not pre-mapped to the genome. The data track is designed to be viewable on-demand against a displayed region of interest in the assembly. This will not help address your questions about potential recognition sites or their density within a genome.
However, a unix command-line tool has been developed by one of our scientists that will perform this type of mapping. The general idea is for us to make this mapping tool available as part of the source code tree we release for research use. From there, you would need to generate your own data/statistics. For viewing results, the data could be formatted into a custom track and uploaded to view against the genomic and other annotation tracks. We are in the process updating our REBASE file and packaging up the tool with instructions. When complete, we will send you an email to let you know it is ready. Thank you, Jennifer Jackson UCSC Genome Bioinformatics Group Weinhäusel Andreas wrote: > Dear Colleagues, > > is there an possibility to visualise potentially McrBC enzyme recognition > sites and density within UCSC-GB? > > > > McrBC has the preferred recognition seq. "RC(N*(55-103))RC" - in case if I > would search a vertebrate genome for CpG methylation the preferred > recognition seq. would be "RCG(N*(55-103))RCG" . > > > > Would be nice to get this visualized.... > > > > Greetings ANDREAS > > > > DIDr Andreas Weinhäusel > > _____________________________________ > > > > Austrian Research Centers GmbH - ARC > > Life Sciences > > Research Center: 2444 Seibersdorf, Austria > > T +43 (0) 50 550-3402, F +43 (0) 50 550-3653 > > [email protected] <mailto:[email protected]> > > http://www.arcs.ac.at <http://www.arcs.ac.at/> > > _____________________________________ > > > > http://www.lifesciences.at <http://www.lifesciences.at/> > > _____________________________________ > > > > FBN: 115980i HG Wien, UID: ATU14703506 > > > > _______________________________________________ > Genome maillist - [email protected] > http://www.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
