Hello again, I have an update to my previous reply. We were unable to incorporate this particular data from REBASE into our data track. Current implementation allows only for complete (non-variable length) sequence alignment.
Jennifer Jackson UCSC Genome Bioinformatics Group Weinhäusel Andreas wrote: > Dear Colleagues, > > is there an possibility to visualise potentially McrBC enzyme recognition > sites and density within UCSC-GB? > > > > McrBC has the preferred recognition seq. "RC(N*(55-103))RC" - in case if I > would search a vertebrate genome for CpG methylation the preferred > recognition seq. would be "RCG(N*(55-103))RCG" . > > > > Would be nice to get this visualized.... > > > > Greetings ANDREAS > > > > DIDr Andreas Weinhäusel > > _____________________________________ > > > > Austrian Research Centers GmbH - ARC > > Life Sciences > > Research Center: 2444 Seibersdorf, Austria > > T +43 (0) 50 550-3402, F +43 (0) 50 550-3653 > > [email protected] <mailto:[email protected]> > > http://www.arcs.ac.at <http://www.arcs.ac.at/> > > _____________________________________ > > > > http://www.lifesciences.at <http://www.lifesciences.at/> > > _____________________________________ > > > > FBN: 115980i HG Wien, UID: ATU14703506 > > > > _______________________________________________ > Genome maillist - [email protected] > http://www.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
