Hello Ginny, We have a number of resources that may be of interest to you. BLAT is a good way to find human matches for specific chimp sequences. You could also look at the conservation track on either human or chimp - you'll find it in the "Comparative Genomics" group. If you click on the blue/gray bar to the left of the conservation track in the main display or on the track title above the pulldown menu for the track it will take you to a description of the track and how it was created.
If you wanted all of the matches you could also look at the pairwise alignment files for chimp and human in our downloads section: http://hgdownload.cse.ucsc.edu/goldenPath/panTro2/vsHg18/ Hopefully this information was helpful and is enough to get you started. If you have further questions or require clarification feel free to contact the mailing list at [email protected]. Regards, Pauline Fujita UCSC Genome Bioinformatics Group http://genome.ucsc.edu ginny lopez wrote: > Im trying to find the chimp sequences that match the humans. I'm having a > diffucult time doing this on the genome browser can you help. I was using > blast but was getting no similarities. Your help is really appreciated. > > > > _______________________________________________ > Genome maillist - [email protected] > http://www.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
