Hello again Erin,
We have finally figured out what was causing the gene you mention to
display incorrectly, and we have corrected it. As you know, dark blue
entries correspond to:
Dark blue -- transcript has been reviewed or validated by either the
RefSeq, SwissProt or CCDS staff
The problem was that transcripts that were included in this set because
they were validated by CCDS were left out of the group that received
dark blue coloring. We have corrected this in the current version, and
have amended the process so that it will not happen in future updates of
UCSC Genes.
Thank you for your patience and for pointing out the error. We
apologize for the inconvenience.
--
Brooke Rhead
UCSC Genome Bioinformatics Group
On 10/27/08 18:00, Brooke Rhead wrote:
> Hello Erin,
>
> The coloring of this gene does look incorrect. The developer of the
> UCSC Genes track is looking into it. I will let you know the outcome.
>
> Thank you for pointing this out, and sorry for any confusion it has caused!
>
> --
> Brooke Rhead
> UCSC Genome Bioinformatics Group
>
>
> Kaminsky, Erin Baldwin wrote:
>> Hello-
>> I have a question regarding the recent update of the UCSC Genes (Wed,
> 10 Sep 2008). In comparing the old version and the updated one, it
> appears that some of the genes have changed color-code classifications.
> It seems as though there are fewer black/dark blue classifications for
> the updated version. For example, in the May 2004 version, SHOX was
> listed as dark blue ("Reviewed" or "Validated") but in the updated 2006
> version, SHOX appears to be light blue (non-RefSeq transcript). Any
> suggestions as to the changes?
>> Thank you!
>> --Erin
>>
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