Hello,
We do not store alignments in the database. However, there is a file 
that includes some surrounding genomic for data in the dbSNP dataset 
(labeled by the snp identifier) that can be downloaded via ftp.

goldenPath/hgFixed/database/dbSnpRsHg.txt.gz

Instruction for using ftp: http://genome.ucsc.edu/FAQ/FAQdownloads#download1

Thank you,
Jennifer Jackson
UCSC Genome Bioinformatics Group

Revak Raj Tyagi wrote:
> Hi,
>
> I want to download alignments of regions around some SNP sites (~2000).
> Can someone please guide how this can be done? I already have the
> positions using SNPs table in Table Browser, but it doesn't give option
> for downloading alignments.
>
> Thank you,
> With regards,
>
>
> Revak Raj Tyagi
>
> The Biodesign Institute
> Arizona State University
>
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