Hi Jennifer, Thank you for the clarification. I have another question. Table Browser allows downloading of CDS FASTA alignments for tracks like UCSC genes and refSeq genes. How does this part interacts with the database? Can this be linked with positions obtained from SNPs table?
Thank you, With regards, Revak Raj Tyagi The Biodesign Institute Arizona State University On Mon, 2009-02-16 at 14:07 -0800, Jennifer Jackson wrote: > Hello, > We do not store alignments in the database. However, there is a file > that includes some surrounding genomic for data in the dbSNP dataset > (labeled by the snp identifier) that can be downloaded via ftp. > > goldenPath/hgFixed/database/dbSnpRsHg.txt.gz > > Instruction for using ftp: http://genome.ucsc.edu/FAQ/FAQdownloads#download1 > > Thank you, > Jennifer Jackson > UCSC Genome Bioinformatics Group > > Revak Raj Tyagi wrote: > > Hi, > > > > I want to download alignments of regions around some SNP sites (~2000). > > Can someone please guide how this can be done? I already have the > > positions using SNPs table in Table Browser, but it doesn't give option > > for downloading alignments. > > > > Thank you, > > With regards, > > > > > > Revak Raj Tyagi > > > > The Biodesign Institute > > Arizona State University > > > > _______________________________________________ > > Genome maillist - [email protected] > > http://www.soe.ucsc.edu/mailman/listinfo/genome > > _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
