Hello Jay, Some things you can try are:
1. BLAT the mRNA from NCBI, and note all the hits. 2. Turn on the repeatMasker track in this region. 3. Turn on the SIB Alt Splicing track. I hope this helps to elucidate the concerns you have with the data. Kayla Smith UCSC Genome Bioinformatics Group Jay Vyas wrote: > genome : mouse > assembly : 2007 > track : knownToRefseq > > Hi guys : I noticed that some refseq genes, for example, NM_008477, > NM_008647, have several ucsc variants (21, and 17, respectively). > > Im not sure where this comes from ... Refseq sequences should presumeably > only have, at most, a couple of ucsc variants. > > Is this because certain tracks have multiple different ucsc identifiers as a > ucsc versioning artifact ? > > Please let me know ... thanks. > > Jay Vyas > UConn Health Center > _______________________________________________ > Genome maillist - [email protected] > http://www.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
