Hello Xianjun, The Human Proteins track for medaka (oryLat2) is now available on the main UCSC Genome Browser site.
-- Brooke Rhead UCSC Genome Bioinformatics Group On 02/02/09 16:51, Jennifer Jackson wrote: > Hi Xianjun , > > Recently, the medaka genome was updated to a newer version. The data > track you mention has not been through our QA release process yet, but > when it is released we will send you an email. > > Meanwhile, you can access both the previous release oryLat1 and the new > release oryLat2 on our test server. Both are annotated, but be aware > that some of these annotation tracks have not gone through QA yet (or > may never go through QA). > http://genome-test.cse.ucsc.edu/ > > We removed oryLat1 from the main browser because of some data problems. > We documented the problem in the oryLat1 downloads README file: > http://hgwdev.cse.ucsc.edu/goldenPath/oryLat1/bigZips/ >> ERROR NOTE: We have determined that UCSC's assembly of the chrUn >> sequence for oryLat1 is incorrect: the gap relationships between >> contigs within their ultracontigs are broken. We are in the process of >> correcting this error, and plan to post a corrected data set in late >> July. We apologize for the inconvenience. > We hope this helps to clear things up, > UCSC Genome Bioinformatics Group > > Jennifer Jackson > > >> Xianjun Dong Xianjun.Dong at bccs.uib.no >> Mon Feb 2 02:24:32 PST 2009 >> >> Hi, >> >> There was "Human Proteins Mapped by Chained tBLASTn" track in medaka >> genome, but it's not there now. I am wandering if it's because of the >> wrong data or you missed to put there. It is a quite often used track, >> at least for the incompletely annotated medaka genome. >> >> Regards, >> >> Xianjun >> >> >> > _______________________________________________ > Genome maillist - [email protected] > http://www.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
