Hello, There are several tracks in the UCSC Browser that may be useful for you. Each track has a track description page that describes the methods and sources. If none meet your exact needs, the Table browser can be used to link (by genomic overlap) data between two tracks of interest (for example SNP 129 and GAD View).
For human, start with the track groups "Phenotype and Disease Associations" and "Variation and Repeats" and "Pilot ENCODE Comparative Genomics and Variation". The track UCSC Genes from the group "Genes and Gene Prediction Tracks" also contains some of this type of information on a per-gene basis. Help links to obtain data: http://genome.ucsc.edu/cgi-bin/hgTables http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html http://genome.ucsc.edu/FAQ/FAQdownloads#download1 We hope this provides a useful starting place to begin your research. If you have specific questions about the Table browser or a track after reviewing the data/help, please let us know and we can provide more details, Jennifer Jackson UCSC Genome Bioinformatics Group Doug Wolfgram wrote: > Can anyone tell me if there is a published list of snps/phenotypes > anywhere? It doesn't have to be comprehensive, but I'd like a summary > of research done to date to determine which snps contribute to which > of the various phenotypes. Especially diseases-related phenotypes. > > Thanks! > > ------------- > Doug Wolfgram > [email protected] > > > > _______________________________________________ > Genome maillist - [email protected] > http://www.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
