Hi, I have been using BLAT for my sequence analysis. I was wondering if there is anyway to find the significance of a particular alignment found by BLAT (like BLAST has e-value)? If we run BLAT and set output mode as blast then it will automatically calculcate e-value but I have aligned my all my sequences with output format as psl. Is there anyway to calculate e-value from BLAT psl output??
Thanks for your help. Sincerely, -- -------- Vinay Kumar Mittal PhD,Bioinformatics Georgia Institute of Technology _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
