Good Afternoon Sheila: Please note also: http://genomewiki.ucsc.edu/index.php/Using_hgWiggle_without_a_database
for the command line tool that can read the .wib files to extract the data. --Hiram Jennifer Jackson wrote: > Hello, > > ftp://hgdownload.cse.ucsc.edu/gbdb/hg17/wib/ > > When you first open the ftp connection as usual, type "ls" and you will > see the /gbdb location at the same level as /goldenPath. > > It is not an obvious location from the Downloads main html page. The > "http" has to be changed to "ftp" for the path to be seen in a web browser. > > Thanks! > Jennifer Jackson > UCSC Genome Bioinformatics Group > > Sheila Reynolds wrote: >> I just ftp'd the following four files from >> hgdownload.cse.ucsc.edu/goldenPath/hg17/database/ >> >> 150 Opening BINARY mode data connection for dukeDnaseCd4Signal.sql (1797 >> bytes) >> 150 Opening BINARY mode data connection for dukeDnaseCd4Signal.txt.gz >> (87219606 bytes) >> 150 Opening BINARY mode data connection for dukeDnaseCd4Sites.sql (1523 >> bytes) >> 150 Opening BINARY mode data connection for dukeDnaseCd4Sites.txt.gz >> (1591267 bytes) >> >> and the *Signal.txt file seems to reference one or more files named >> something like >> >> /gbdb/hg17/wib/dukeDnaseCd4Signal.wib >> >> where can I find that file so that I can download that too ? >> (as that is the one that appears to actually have the raw signal values in >> it) >> >> thanks, >> >> Sheila >> _______________________________________________ >> Genome maillist - [email protected] >> http://www.soe.ucsc.edu/mailman/listinfo/genome >> > _______________________________________________ > Genome maillist - [email protected] > http://www.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
