Hello, One alternative is to create a url link to the data that has the base position set to display in the reverse complement: http://genome.ucsc.edu/FAQ/FAQcustom#custom5 For example, in this url the complement is designated as "complement_hg18=1" : http://genome.ucsc.edu/cgi-bin/hgTracks?complement_hg18=1 Be sure to leave hgsid variables out of your constructed urls (as advised in the FAQ)
Another alternative is to use the Sessions feature. Please see our FAQ here: http://genome.ucsc.edu/cgi-bin/hgSession General custom track help: http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#CustomTracks We hope that one of these options helps, Jennifer Jackson UCSC Genome Bioinformatics Group Benson, Craig C wrote: > Is there a way to specify that the reverse compliment (or minus) strand be > displayed in the "Base Position" track within a BED formatted custom track? > > Thanks! > > Craig C. Benson, MD > Med-Peds Residency Program > University of Rochester Medical Center > > > _______________________________________________ > Genome maillist - [email protected] > http://www.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
