Hi Jennifer, Thanks for your quick reply !
What we actually do here is that we use a script witch act as a user agent to query DNA sequences from your website using your "Get DNA" tool. So, now I have downloaded entire chromosomes files and Genome Browser source code and executables, I am not sure about the right executable to use... Do you know witch is the executable that retrieve DNA sequence from a given genomic position ? Thank a lot. Édouard Jennifer Jackson wrote: > Hello, > > We are not sure which method you are using to do your large batch > queries. If downloading files using your web browser from our > downloads area, it will complain about very large files as you describe. > > Instead, I would recommend direct ftp to download entire chromosomes > or database files/tables. Then using our tools or yours to subset the > data as necessary. If you are not a unix user, the Table browser is a > good option. Instructions for both methods are in this FAQ: > http://genome.ucsc.edu/FAQ/FAQdownloads#download32 > > If this does not help, please let us know. In your reply, please > include the specifics of the process (download method, genome/version, > file names, etc) that you have questions about and we can provide more > help, > Thank you, > Jennifer Jackson > UCSC Genome Bioinformatics Group > > Edouard Henrion wrote: >> Hi, >> >> I am making quite large batch queries to retrieve genomic DNA >> sequence from UCSC website. >> My browser just displayed a message telling me that I should inquire >> about more efficient ways to access your data. >> Could you please inform me about these better ways ? >> >> Thanks a lot ! >> >> Édouard -- =========================================== Édouard Henrion Bioinformaticien / Bioinformatician Centre de Recherche du CHUM Research Center Hôpital Notre-Dame Hospital Montréal, Québec - Canada Tel: 514-890-8000 * 25249 eMail: [email protected] =========================================== _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
