Thanks a lot guys ! I am already playing with faFrag ! I will certainly test twoBitToFa since I also converted my .fa files into .2bit. Then I will compare the efficiency of each tool regarding my needs.
Thanks again ! Édouard Hiram Clawson wrote: > twoBitToFa with the .2bit files > nibFrag with the .nib files > faFrag with any .fa file > > --Hiram > > Edouard Henrion wrote: >> Hi Jennifer, >> >> Thanks for your quick reply ! >> >> What we actually do here is that we use a script which act as a user >> agent to query DNA sequences from your website using your "Get DNA" >> tool. >> >> So, now I have downloaded entire chromosomes files and Genome Browser >> source code and executables, I am not sure about the right executable >> to use... Do you know which is the executable that retrieve DNA >> sequence from a given genomic position ? >> >> Thank a lot. >> >> Édouard -- =========================================== Édouard Henrion Bioinformaticien / Bioinformatician Centre de Recherche du CHUM Research Center Hôpital Notre-Dame Hospital Montréal, Québec - Canada Tel: 514-890-8000 * 25249 eMail: [email protected] =========================================== _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
