Hello, Would you be able to provide a bit more detail? Which variable are you interested in? You have the short description, long description and name field already populated in your example. The Tajima's D SNPs data is also in a simple BED format.
If you want to create track controls that can be modified, that is beyond the capability of a custom track. Sessions might be helpful if you want to set up a special set of viewing options: http://genome.ucsc.edu/goldenPath/help/hgSessionHelp.html Perhaps you are interested in the description or details page? You can create custom urls to point to external locations (such as an html file with information, links, etc). Back in the custom track help http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#CustomTracks, scroll or search down to Track Lines where url variables are described. Please send more info if this does not address your question, Jennifer Jackson UCSC Genome Bioinformatics Group [email protected] wrote: > Dear Sir/Madam, > I have a question regarding displaying my own annotation in the Genome Browser > using "BED" format. I was already successful in displaying BED lines using > itemRgb as in the example 5 (included below). This was good for relatively > short objects (like conversion tracks in my case). I'm interested in > displaying > a variable similar to Tajima's D track in your browser. So I would like to > know > what would be the "BED" format (as in your example 5) for Tajima's D track, so > I can add a similar variable in my own annotation. > Thank you so much in advance > Looking forward to hearing from you. > Katja Shabanova > PhD student > AG Wiehe > Institute for Genetics > Cologne > Germany > > > PS Example 5 for BED lines > browser position chr7:127471196-127495720 > browser hide all > track name="ItemRGBDemo" description="Item RGB demonstration" visibility=2 > itemRgb="On" > chr7 127471196 127472363 Pos1 0 + 127471196 127472363 255,0,0 > chr7 127472363 127473530 Pos2 0 + 127472363 127473530 255,0,0 > chr7 127473530 127474697 Pos3 0 + 127473530 127474697 255,0,0 > chr7 127474697 127475864 Pos4 0 + 127474697 127475864 255,0,0 > chr7 127475864 127477031 Neg1 0 - 127475864 127477031 0,0,255 > chr7 127477031 127478198 Neg2 0 - 127477031 127478198 0,0,255 > chr7 127478198 127479365 Neg3 0 - 127478198 127479365 0,0,255 > chr7 127479365 127480532 Pos5 0 + 127479365 127480532 255,0,0 > chr7 127480532 127481699 Neg4 0 - 127480532 127481699 0,0,255 > > _______________________________________________ > Genome maillist - [email protected] > http://www.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
