Hello, A developer brought up that the Tajima's D track also has a wiggle track (in addition to the simple bed). Is this what you wanted to do? If so, then the format used would be bedGraph. Here is a link to how to create this type of track: http://genome.ucsc.edu/goldenPath/help/bedgraph.html
Please let us know if this does not help, Thanks, Jennifer Jackson [email protected] wrote: > Dear Sir/Madam, > I have a question regarding displaying my own annotation in the Genome Browser > using "BED" format. I was already successful in displaying BED lines using > itemRgb as in the example 5 (included below). This was good for relatively > short objects (like conversion tracks in my case). I'm interested in > displaying > a variable similar to Tajima's D track in your browser. So I would like to > know > what would be the "BED" format (as in your example 5) for Tajima's D track, so > I can add a similar variable in my own annotation. > Thank you so much in advance > Looking forward to hearing from you. > Katja Shabanova > PhD student > AG Wiehe > Institute for Genetics > Cologne > Germany > > > PS Example 5 for BED lines > browser position chr7:127471196-127495720 > browser hide all > track name="ItemRGBDemo" description="Item RGB demonstration" visibility=2 > itemRgb="On" > chr7 127471196 127472363 Pos1 0 + 127471196 127472363 255,0,0 > chr7 127472363 127473530 Pos2 0 + 127472363 127473530 255,0,0 > chr7 127473530 127474697 Pos3 0 + 127473530 127474697 255,0,0 > chr7 127474697 127475864 Pos4 0 + 127474697 127475864 255,0,0 > chr7 127475864 127477031 Neg1 0 - 127475864 127477031 0,0,255 > chr7 127477031 127478198 Neg2 0 - 127477031 127478198 0,0,255 > chr7 127478198 127479365 Neg3 0 - 127478198 127479365 0,0,255 > chr7 127479365 127480532 Pos5 0 + 127479365 127480532 255,0,0 > chr7 127480532 127481699 Neg4 0 - 127480532 127481699 0,0,255 > > _______________________________________________ > Genome maillist - [email protected] > http://www.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
