Hello, The Table browser is a good tool for this type of question. http://genome.ucsc.edu/cgi-bin/hgTables The basic query path is: 1) set the database variables (clade, genome, assembly) 2) set group/track containing gene data 3) paste in gene names as identifiers 4) export result as a file (selected table or add in linked tables) 5) name file and download results
To determine which tracks interest you, examine those in the Gene and Gene Prediction group in the Assembly browser. Read the track descriptions to understand the data contents. Click on "view table scheme" to see the table (and output file) format. UCSC Genes and RefSeq genes are good places to start. Some specific help: http://genome.ucsc.edu/cgi-bin/hgTables?command=start#Help http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html Thanks, Jennifer Jackson UCSC Genome Bioinformatics Group YANG Ninghan wrote: > Hi, > > I have a list of 70 genes. I want to pull out the accession numbers from both > RefSeq and Genbank for each of these 70 genes. How can I go about doing it > with the Table Browser? > > Thanks, > Ninghan > _______________________________________________ > Genome maillist - [email protected] > http://www.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
