Hi Louis, Let's take this off-line and check a few more things about the install. I'll email you. Jennifer
Louis Letourneau wrote: > Yup, it was there (in my case in /var/www/trash). > Just to be sure I also checked /var/www/html/trash, and that one was a > symlink to the other. > > This directory was in /var/www/trash 'hgtIdeo'. > > I don't know if it helps but, I'm running all this on ubuntu > 8.10(intrepid ibex) on a core2Duo with 8G of ram. > > The mysql server is on another server. > hgsql works fine. > > ~/src/jksrcCVS $ uname -a > Linux protogonus 2.6.27-14-generic #1 SMP Wed Apr 15 19:29:46 UTC 2009 > x86_64 GNU/Linux > > Thanks > Louis > > Jennifer Jackson wrote: >> Hello, >> The first thing to double check is if your trash directory was >> created correctly (verify permissions, etc) >> >> http://genome.ucsc.edu/admin/mirror.html#step8 >> >> 8. Create a "trash" directory >> The cgi programs use a temporary area to create and store images used >> by the browser. This directory is by default looked for in >> $WEBROOT/trash. You should make this directory and allow the user >> that runs the web server write access to it. >> >> If this does not solve the problem, please get back to us. >> Jennifer Jackson >> UCSC Genome Bioinformatics Group >> >> Louis Letourneau wrote: >>> Hello, >>> I'm trying to setup a mirror of your browser with hg18 and mm9. I >>> followed the instructions here: >>> http://genome.ucsc.edu/admin/mirror.html >>> >>> and here: >>> http://genome.ucsc.edu/admin/jk-install.html >>> (actually I followed the 'product/README.building.source') >>> >>> Everything built without a hitch, and I get most of the pages fine. >>> >>> The problem is after I submit a search criteria, only the begin of >>> the page prints and I get this in the logs: >>> >>> *** buffer overflow detected ***: /var/www/cgi-bin/hgTracks terminated >>> ======= Backtrace: ========= >>> /lib/libc.so.6(__fortify_fail+0x37)[0x7fe75e41a887] >>> /lib/libc.so.6[0x7fe75e418750] >>> /var/www/cgi-bin/hgTracks(mgSaveToGif+0x4a)[0x55f69a] >>> /var/www/cgi-bin/hgTracks(mgSaveGif+0x34)[0x55f84b] >>> /var/www/cgi-bin/hgTracks(memGifClose+0x2d)[0x55da04] >>> /var/www/cgi-bin/hgTracks(vgClose+0x13)[0x55d917] >>> /var/www/cgi-bin/hgTracks(hvGfxClose+0x15)[0x4e0e94] >>> /var/www/cgi-bin/hgTracks(makeChromIdeoImage+0x383)[0x45386b] >>> /var/www/cgi-bin/hgTracks(doTrackForm+0x90d)[0x45657f] >>> /var/www/cgi-bin/hgTracks(tracksDisplay+0x808)[0x4579b1] >>> /var/www/cgi-bin/hgTracks(doMiddle+0x3bb)[0x457d9c] >>> /var/www/cgi-bin/hgTracks[0x4a8a18] >>> /var/www/cgi-bin/hgTracks(cartWarnCatcher+0x27)[0x4a8a4f] >>> /var/www/cgi-bin/hgTracks(cartHtmlShellWithHead+0x18b)[0x4ab57b] >>> /var/www/cgi-bin/hgTracks(cartHtmlShell+0x1d)[0x4ab5fa] >>> /var/www/cgi-bin/hgTracks(main+0x158)[0x44ca28] >>> /lib/libc.so.6(__libc_start_main+0xe6)[0x7fe75e339466] >>> /var/www/cgi-bin/hgTracks[0x44c609] >>> >>> [...] >>> >>> indeed if I call this: >>> echo >>> "hgsid=6&clade=mammal&org=Human&db=hg18&position=chrX%3A151%2C073%2C054-151%2C383%2C976&pix=800&Submit=submit"| >>> >>> /var/www/cgi-bin/hgTracks >>> >>> I get the begin of the html of the page, and then the same crash >>> occurs. >>> >>> Do you have any ideas? >>> >>> Thanks >>> Louis >>> _______________________________________________ >>> Genome-mirror mailing list >>> [email protected] >>> http://www.soe.ucsc.edu/mailman/listinfo/genome-mirror >>> _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
