Some collaborators and I are interested in identifying conserved genome regions from 5 species (human, mouse, rat, dog and chimp). Unfortunately, the Conservation track with the phastCons9way table doesn't include the chimp, has other mammalian species we are not interested in and is generated from older genome builds for mouse and human. Is there a pipeline we can leverage by which we can generate the Conservation regions for these 5 species using the latest builds and generate the phastCon scores as well as the mapping coordinates?
Thanks, Pierre R. Bushel, Ph.D. Head, Microarray and Genome Informatics Staff Scientist, Biostatistics Branch National Institute of Environmental Health Sciences 111 T.W. Alexander Drive P.O. Box 12233 RTP, NC 27709 (VM) 919-316-4564 (Fax) 919-316-4649 [email protected]<mailto:[email protected]> _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
