Hello, There is no automated pipeline to create the data, but the Methods and Credits on the Conservation track description page are very comprehensive.
Any tools developed internally are in the ~/kent source tree and the makefile associated with hg18 (Human, May 2006) will have processing details. This document can be located at this path: kent/src/hg/makeDb/doc/hg18.txt http://genome.ucsc.edu/FAQ/FAQdownloads#download27 We hope this helps, Jennifer Jackson UCSC Genome Bioinformatics Group Bushel, Pierre (NIH/NIEHS) [E] wrote: > Some collaborators and I are interested in identifying conserved genome > regions from 5 species (human, mouse, rat, dog and chimp). Unfortunately, > the Conservation track with the phastCons9way table doesn't include the > chimp, has other mammalian species we are not interested in and is generated > from older genome builds for mouse and human. Is there a pipeline we can > leverage by which we can generate the Conservation regions for these 5 > species using the latest builds and generate the phastCon scores as well as > the mapping coordinates? > > Thanks, > > Pierre R. Bushel, Ph.D. > Head, Microarray and Genome Informatics > Staff Scientist, Biostatistics Branch > National Institute of Environmental Health Sciences > 111 T.W. Alexander Drive > P.O. Box 12233 > RTP, NC 27709 > (VM) 919-316-4564 > (Fax) 919-316-4649 > [email protected]<mailto:[email protected]> > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
