Hi Andreas, This liftOver data (both ways) is available in two other locations right now and we plan to release it into the regular goldenPath Downloads area soon (the release log for each species will be noted at that time).
For now, please use one of these options: 1) Batch Coordinate Conversion tool at http://genome.ucsc.edu/cgi-bin/hgLiftOver 2) ftp to Downloads and instead of going into the goldenPath, cd into gbdb and find the data at: gbdb/galGal3/liftOver/galGal3ToTaeGut1.over.chain.gz gbdb/taeGut1/liftOver/taeGut1ToGalGal3.over.chain.gz Please let us know if you run into any problems, Jennifer Jackson UCSC Genome Bioinformatics Group Andreas Heger wrote: > Dear UCSC genome browser team, > > I was looking for a liftOver file between > chicken and zebra finch, but found none > in http://hgdownload.cse.ucsc.edu/goldenPath/taeGut1/liftOver/ > and http://hgdownload.cse.ucsc.edu/goldenPath/galGal3/liftOver/ > > Do you plan to create a liftOver file between these two species? > If so, can you already say when it would be available? > > Best wishes, > Andreas Heger > MRC FGU, Oxford, UK > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
