Dear UCSC folks, I wanted to get some statistics on how identical the UCSC genome sequence is when compared to the actual transcript database sequences like the refseq. For example for the Gene EZH2, http://genome.ucsc.edu/cgi-bin/hgc?hgsid=132900058&o=148135407&t=148212347&g=refGene&i=NM_004456&c=chr7&l=148135407&r=148212347&db=hg18&pix=800 The alignment columns says 100%. Does that mean if I grab the sequence bolcks from UCSC and assemble them I would replicate the Refseq sequence?
Could you please let where I could such data for all the transcripts, to get an estimate of how much of each source, eg Refseq, Ensembl are different when you compare their transcript sequences to the genomic sequence? Thank you very much, Vinayak. -- -- "Hesitating to act because the whole vision might not be achieved, or because others do not yet share it, is an attitude that only hinders progress"... Mahatma Gandhi _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
