Hello, The hg17 track 'Riken CAGE - Predicted Gene Start Sites' has a version/update of: Data version: ENCODE June 2005 Freeze
The region for your feature (below) was not included in this ENCODE freeze. The regions are identified in the table hg17.encodeRegions. For hg18, the same dataset was used. For hg19, the dataset has not been added yet. Hope this helps, Jennifer Jackson UCSC Genome Bioinformatics Group Osvaldo Graña wrote: > hi there > > here is my question, thanks very much in advance!! > > Riken DB points out a CAGE TSS inside the following location in human > chromosome 7:158613139..158628139 > > you can check it out here: > http://gerg01.gsc.riken.jp/cage_analysis/hg17prmtr/TSSSummary.php?tss_id=T07F09747659 > > > (this was just an example) > > > but the UCSC genome browser 'Riken CAGE - Predicted Gene Start Sites' > track does not show anything for this region (please check it out in the > link below) > http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=132089178&clade=mammal&org=Human&db=hg17&position=chr7%3A158613139-158628139&pix=1024&Submit=submit > > > > > Indeed, I haven't been able to find any of the CAGE TSS (that are > pointed out in the Riken DB) in the UCSC genome browser for the regions > I am interested in. > > What is the reason for this difference? Am I missing something? > thanks > > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
