Hello, The processing has been updated since mm8.
The phastcons data for mm9 is located here: http://hgdownload.cse.ucsc.edu/goldenPath/mm9/phastCons30way/ The README doc at this location as well as the track's details page (inside Assembly browser) describe data format. Also, here is a direct link: http://genome.ucsc.edu/goldenPath/help/phastCons.html I hope this helps, but please let us know if you have any questions, Jennifer Jackson UCSC Genome Bioinformatics Group Fungazid wrote: > Hello again, > > Thanks for your recent help (now liftOver works fine), > > I have another problem: > I installed hgWiggle program (compiled with the J. Kent source code), and it > seems to work fine with gc5Base.wib/wig output. To my knowledge this is also > a recommended way for finding conservation statistics of specific genomic > regions (Is it true?). I find phastCons17.wib/wig for mm8 in: > > ftp://hgdownload.cse.ucsc.edu/gbdb/mm8/wib/ > ftp://hgdownload.cse.ucsc.edu/goldenPath/mm8/database > > But no such files for mm9. > > Could you add these tables (or explain/direct-to-documentation on how to > build the wib/wig, if this is not a very slow process on simple PC). Or is > there a new way to find conservation statistics for large scale work? > > > Thanks > Avi > > > > > > > > > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
