Hello again, Thanks for your recent help (now liftOver works fine),
I have another problem: I installed hgWiggle program (compiled with the J. Kent source code), and it seems to work fine with gc5Base.wib/wig output. To my knowledge this is also a recommended way for finding conservation statistics of specific genomic regions (Is it true?). I find phastCons17.wib/wig for mm8 in: ftp://hgdownload.cse.ucsc.edu/gbdb/mm8/wib/ ftp://hgdownload.cse.ucsc.edu/goldenPath/mm8/database But no such files for mm9. Could you add these tables (or explain/direct-to-documentation on how to build the wib/wig, if this is not a very slow process on simple PC). Or is there a new way to find conservation statistics for large scale work? Thanks Avi _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
