Hello, I have a list of human gene sequences that I am trying to compare across different species to look for conserved regions. I updated the coordinates from their positions in the March 2006 assembly to the February 2009 assembly. When I try to do comparative analysis using the 2009 assembly positions, the only option I have is to compare it to chimp chain or chimp net. When I do comparative analysis using the 2006 assembly, there are lots of different animals that I can select for it to be compared to. Do you know why this is? How can I get lots of animal options using a 2009 coordinate position. I attached screen shots so you can better understand my problem.
Thank you, Hannah Watkins
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