Hello Hannah, The data has not been finalized for the Feb 2009 assembly (hg19) yet. We recommend that you use the Mar 2006 (hg18) data for now.
If you are willing to use development data (has not undergone QA yet), you are welcome to use the hg19 comparative tracks available on our test server http://genome-test.cse.ucsc.edu/. The datasets included may differ from the hg18 version. When the data is released for hg19, the release log will be noted. Thanks, Jennifer Jackson UCSC Genome Bioinformatics Group Hannah Watkins wrote: > Hello, > > I have a list of human gene sequences that I am trying to compare > across different species to look for conserved regions. I updated the > coordinates from their positions in the March 2006 assembly to the > February 2009 assembly. When I try to do comparative analysis using > the 2009 assembly positions, the only option I have is to compare it > to chimp chain or chimp net. When I do comparative analysis using the > 2006 assembly, there are lots of different animals that I can select > for it to be compared to. Do you know why this is? How can I get > lots of animal options using a 2009 coordinate position. I attached > screen shots so you can better understand my problem. > > Thank you, > Hannah Watkins > > ------------------------------------------------------------------------ > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
