Dear colleague, I did BLAT search for the following sequence
>NM_182762 6276 AACAAAGCGUGUGUUUUUGAUGGGAGGGAAAAUGAGGUAAUGGUGUGUGU GUGUGUGUGUCUGUGUGUGUCUGUGUGUGUCUCUGUGUGUCUGUGUGUGU GUGUCUGUGUGUGUGUGUCUGUGUGUGUGUGUGUGUGUGUGUAGGAAAGA AAGAAUCUCAGAAAAGCAUUAUAUUAAUUUUCUUCAUGCUCAAAACCAGU UUUUUUUUCCUGAUGAAAGCACAGCCUAACUGAUAACCAAGAUGGGUUUU AUCCUCAAAUAUGUAUUUUUGUGUAUGUUUCAAAUACAAGUAUUAGGCUG CUUUGUUCUUAGAAAGGAAAGAAAAAAGAAAAGUGCCCUCUCUCUCUUUC AGUGUUAUUUUAAAUUUACUAAGUCAAAGCUGUUUGAAUAAUUACAUCAC ACAGAUAUCUGGGUAAACUAGAGACUAUCAACAUGAUCAAGGCAGUGUUC CCAGGAGGCAGCUAGAAAGAGGGGAAGCAAGCACACACCCUGUGGCCAGU CACGGCUGCCCGCUUUCCACACCUGACCUCUUCAGUUCAUCAGUGGGGUU CACCAGCAUCACCCCCAUUUUUCAUGGGGAGAAACUCAGAAGUGGAGAGA ACGUCUGAGGCUACAUAGCCAGUACAAAGUAGGUUUUCUGCUUGAAAAAC CUGUUUCUAUUUCUUUUUAAAAAAUCAUACUGCAUAACAGAAUAGUAAAA ACAAAAUGCGUGUUAAGACUUACAGGGAAACAGUUGCCGUUUCAUUUUAA GUGAGACUUGCUACUCUUUUUCAUCGUCUCUUGAAAGACUGACAGAAGGA AAAUAUGACUUAUCAGAAAUCUGUUGUCUGCAUGCAUGGACCUAGUGUUU UCAUCAGCUCCCUUCAGCAUCUUGGGACCUCUCUAAUCCUGCCUAAUUUG GGACUUUUUCUGCAGGAUUGUAAUGUAAAAUAGUUCUUUAGCUCUUGGAG AUUUUUAAUAAUACGAGUUAUUAAAAACCACCACCACCAGAAACUUGAUU AACUUGAUUACCCUGUUGAGUAGAGAGGUCUUAACCACCGAAAACACUGA UAUCUUUAUGUUGGCAUGCUCAUGCAAACACAUGUGUGUGUGUGUGUGUG UGUGUGUGUGUGUGUGUGUACCACAGUGUUUUAUAAAGCACAGCCUAAUU GAUUAUAUAGGACAAAAAUUGUAUAGGACCCUGGGUCAGUAUAAAUGCUA AUGGCUGACAAAGUUCACAAAGAGAUGUAUUUUGCUUACUCCUCUGUUCA AUCCUCUGGUUGCCUGCCAGUGUUUAUGUGUGUAUUUGGACAGACAUUCA UUUAUUGUCAUUCAGUCAAUAGGUAGAGUAUAUGUGUCUAUUUUUUGGCA GGCAUAUAGAUGCUUGAGGCUAAUGGGAAAAAACCAGCAUGAACUCUGAC UUUAGUAGUGCUAAGUAAUAGAUAAUUUUAAAAAAUGACACCGUUAAAUA GAAAAUGGCAUGCAUACUAACAGUUGCAAUGGAGAGGCUGUGAUGCUACG AGAUAUAAACGUAGAGAUGCCAUCAUGUGAAACUGGAAGUGGGGGUGGGU CAGGGAAAUUUGUUCUUGGAAAGAAAUAAUGAACCUCAAGGAAGAGUAGG CAUUGUCCUGGUGUGGUGGGGUGUAAGCGGUGAUCCCACAAAGCACUGAA GCUCUUAGAUGGGUGGGAGCUGAAUAGGUGCAGAUAGCAGGGGUGAAGGA GUGAAAGGAUAAAAGAUUCAAGGUUGAGAUGAGGAUGGAGCAAGAAGAAG CCACAUUAGGGCCAUUAAGGCUGCUAGAAUUUAGAAAGAAAACACACAGC CUCAAAGAAAUGUGGGUAAGCCAAAGAAGGAUUUUGUUUUGGGAACCUGA AUAAAAGAUGUCCAUUUGGCUAAAAAGUAAAAGCAGAAUCUUUUUAGGGC UUUUAAUAUACCCACCCUGGGAUAUUUGGUAUGCUGGCAAUGGUAAUUCA AAUUGGCGUUUAAGAAUAAUCUUGGCCGGGCGCGAUGGCUCAUGCCUGAA AUCCCAGCACUUUGGGAGGCCGAGGCGGGCAGAUCACUAGGUCAGGAGAU CGAGACCAUCCUGGCUAACGCGGUGAAACCCCGUCUCUACUAAAAAUACA AAAAAUUAGCCGGGCGUGGUGGCAGGCGCCUGUAGUCCCAGCUACUCAGG AGGCUGAGGCAGGAGAAUGGCGUGAACCCGGGAGGCGGAGCUUGCAGUGA GCCGAGUUCAUGCCACUGCACUCCAGCCUGGGUGACAGGCUGUCUCAAAA AAAAAAAAAGGAAUAAUCUGUACGGCUUUCAGUAUUUAUAUUUGAUUAUA AGGGAACACAGCCUGACCAAAUAAUUAUGUAUACACAUUCAAGGACAGAA UUUAUUUUAAUUAAAAAUAAAUUAUGAGAGAAGGAAAAAAAAGCACAGUU UUUACUUUCAGAACACAGUCCUUUUUUGUGGUGAUUUUGCUUUCUUUAGA ACAUUCUUGGAAUCUUAUUAACAUGUCAGCUAACCAGAGAAUUUUGGGAA GGGAUAGUGGGGAUUAAUAACUGGGUUUUUCCAGGCUCCAAGAUCUAAGA AGACAGAGAUCUUGUUAGCUGAUUAGUGUAGUAAGAUUAAAUAAAUAAUU UAAGGUUUACAUUGCAUCAUGUAUUAUGAUUGUGAUUGAGAAUAAUAAGA GUUUAAAAAAAUGAAAAACAAGAUCUCUGUAAUUUGAGGAUGAAACAAUG GUUCUAAUAUUAAUACACACAAAUAUAUUUUAUAAUCUUGUAACAAAUCC UUCCAGGGGAAAUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUGAGCCAGA GUCUGGCUCUGUUGCCCAGACUGGAGUGCGGUGUUUCAAUCUUGACUCAC UGCAACCUCCACCUCCUGGGUUCAAAAGAUCCUUCUGCCUCCGCCUCCCA AGUAGCUGGGAUUACAGGCAUGCACCACCUUGUCCGGGUAAUUUUUGUAU UUUUAGUGGAGACAAGGUUUUACCAUUUUGGCCAGACUGGUCUGGAACUC CUGACCUCAGGUCAUCCACCUGCCUCGGCCUCCCAGAGUGCUAGGAUUAC AGGCAUGAGCCACUGCUCCCAGCCUUCCAGAGGAAUUUUAAGCCCAUGUC CAAACAUUCUGUUUGUAUAAAUAUAUUCUAAUUUUUAAAUAAAUAGUUUC UACUUUUCUGAACUUUAUAUUUUUUCUUGCUAUAAUGGAUUUUCAUAAUC AGAAAAGAUUAAAUUAGUAAUCAUGAAUUGCCUUCAAUAUUUGGCAGUAA GUCAAUGAAAUAAUAAGGCACUUAUAUACCAUCUUUGACAUCAUUAAAAG UAUCAAAUCCCAUUAAUCUAAAACUUCUUUAAGCAUUUUGAAAGCAGAAA AUGUUUACAUGGUUCUUUCAGUUCCUCAGGCUUUUUGUCUAAUGAUGCGU GACUUAGGAUAAGAUUUGAAUUAAGUGCCCAGCUUGAAACAUAAUAAUUU UUCUGUAUAAGCCACAGAUCCUCUACCUCCUUUGUGUUAAAGCCUUUAUA UGAAACAAUUAAGUAGAAGCAUUCAAUAGUGUGUCAUUAACUGUUCAUAC UAAUAAAUGGAUACAGCACAUUUUCAUGGCCUGUAAUGUAGAACAUACUA UAUAAAGUUCUCAGUUUGGGGAUGACUAGGUUUCUGGAAGGAAUAGAAUG CUAAAUCAAUGGAUGGCAUUGGGCUGAGAAACACUGCUGCUACUAAUCAG CCUUGAAUGUGUAAUGUGAACAUGCAAAAGAGAACAUGCAUACACUCAAA UUUGUACAAUGCUAUAACUGGAAGUUGAAGGACUUGAAUUUUUAUAUUGU GCUAUUGUUAUGUUUUCUGUAAUUGUUUAUAUCUAAGGAAUUUUUGAGGU AAUAUAAAAGAAAAAGAGAAUAAUGAACAAUGAUGUCACUGGAGGGUUUU UACAUUAAAUUAGAUCAUUUUUCUUCUUAUUCACAAUAAUAAUCUUAAUC UUUAAGAAUUAAUUAUAAUUUAAUAUUAUAAUUCAUAAUCUUUAAGAAUU AAUAAUUAUAAUUUAAUAUUAUAAUUAAUAAUCUUUAAGAAUUAAUAAAU AUUAUAAUUAAUAAUCUUUAAGAAUUAAUAAUUACAAUUAAUAAUUAAUA AUAAUCUUAAUCUUUAAGAAUUAAUAAUAAUCCUUAAUCGCAAUAAUAAU CGCAAGGAGGAGAAGUAAGUCCCUCCUCCUUCUGUAUGAACUUUUCUCCC ACAUGCUGCUGUAUGGUUUAGUGAGAGUGAAGUUCUAAAGAACAUAUGAU UGGUGGGAUAAUCCAAAGACAUUUUUUCAGAAUCAAAUGGCAUGUCGAAG GUUUGUUUCUUGCAUAUGUAUUUACUGGUCCACAGCACAAAAUAAAGUGA CCACAUAUACAUAGGAAAGUUGAAUUUGUACACAUACAGCAUCUGAAAUG UAUCUGAUGUUCAGCAUCAAGAUUUCACUGAACAUUGUAGAAAUGUGUAU CUUUUGCAUGUAUAUUUUACAUUGAUUUUCUAUUUAUGUACAUCUAGAAA GUUUUAACCCUAAUAAAUAGUUUUGUAAUUUUGAAUAAUAGUGUCAGUUU AUAUGUGAGGGAGUAGAGACAGAGAGGUUAGCACUGGAUAAUAAUUAGUA AGGCCAAAGGAGAAAAUUUCAUAGAAAAUAUUGUUGUUGUCAUAAUGAGU ACAGCAUGAAAGGCUUCCUCUACAAGACACUAGUCAAAGAGUUGAGAGCU GCGGUUUCUAAUCUUUGUCCAUUACUCCCUUACUCCCUAUGAGACUGUGG ACCUGUCACUUGGCCUCUCUGGUCUUCAGUUUUCUCACCAGUAAAACAAG GAACUUGAACCAAAUGACCUCUAGUGUUCCCCUUGGGUUUAAAUGUCUAU AAAUGUUCAAUGACUAGAAUGUAUUGCGUUUUUCUUUAUUCUUUUUGCUU UGAGAAAAGAGAAUGUGAUUUAAGAGUAAUAAUUUGAAUACCAAUUAUCC ACAUUAAAAUUGUGUCCUCUAUGUGUAAGGCAUAGCACAUUUAGCACACA UACAUAAGCACACUAAGCACCUUACAAAUAUCCUCAUUUAUUCUUUACAU AAUCUUUUGAAAUUGAUUAUGUAAUACACACUGUUUUUGAACAAUUGGUG ACUUCCAGCUGUUUAAAACAAACUACAGUAUGGUGCUUGAGUACUGACUU AGGAGGUCAGCAUUGGUUUCACUAGGAGCUUCUCAAAGCACGCUGCCAAA CAUGCUCCAGUCUCAUUGUCAAGGCCUUAGACCAGGCAAUCAUUACGGCA GUGGUUCUUCAACUUCAGCAGCAGCAAAACGAUCUGGCGGGGGCUUGGUG AAACAGACUGCUGGGCUCGACCACCAGAAUUUCUCAUUCAGAGGGUCUGG CCUGAUCACUUGCAUUUCUAAUCACUUCCCAGGUGAUGCAGAUGUUUCUG GUCCAGGGACCCCAGUUUGAGAACCACUGUAUUAAAAUUUCCUUCAUCUC UAUAGAAAUGGAAAGAUUUUUUAUAAGUCCUCUAAUUUGCUUUAAGAUAA AUGAGAUUUCACUUAAUUCUGUUGGAGAAAUUGUUUUAAAAAUUGUGCUA AAGAACCGAAAAUCACUUUAUGUUAAGGCUCUAUUUAUAGCAAGUGAACU UUUCAUGAGUUAAUAAAGGCCUACAAAAAUAAUUUUGACUGUGAAACUAA UUAAAAUCUCUGUGUUUCAUUUAAAGCAUAAACAUAUUUGAAUAAAAAUA GGUUAACAAUAAUUUGGGACAUGUAUUCAGUAUAAUUUUAAGAUAAUUUU ACAAAAUAUAUGUAACAUUGCAUUUGUUUCUGUAAAAUAUCUUCGGAAAA AGCCUUGUUUUCCCUAGUGUGUUAUUUGUUGAAUUUCUUGUUAAAUGUAU UUUUUCCCAUUGAAAAAAAUGUUUUUAAUCAAUGUGAUCAAUACAGCUAU CUAUAUGCCCUGCUUUCACUGUAGAAUUAGAAAGUGUUAAUAAGGUGAUC GGAUGUUCUUUCUAAGGAUCAUAUUCCACAUUUAAAGAGAUGGUGACUGA GAAGAGGUGGCAAGCUGAACCAUCUCACUUUGAGAUUGACGUAUCACGUU UUAUCCUCUGCCAUCAUUUCCUUGUUAAUUGUUUUUCUUUGGGUGAUUGG AAGAAUCUAUGGCUUCCUUUUCUCUGUUCUUAAAGAUAUCAAGACUCUGC CCUUUUGUGACUGGAAGUAGAUUUUAAAUGUCCCUAAUGUUUAUAUGCUC ACUUAAACUCAAUACAUGGAAUUUACUGGGGCAUUUAACUUGUUCAUGAA AAUAGAGUGAGUCAUUGAAAAAUCAA in http://genome.ucsc.edu/cgi-bin/hgBlat (choose version hg18, Mar. 2006) and the result is: BLAT Search Results ACTIONS QUERY SCORE START END QSIZE IDENTITY CHRO STRAND START END SPAN --------------------------------------------------------------------------------------------------- browser <http://genome.ucsc.edu/cgi-bin/hgTracks?position=chr7:20140804-20147092&db=hg18&ss=../trash/hgSs/hgSs_genome_362e_517790.pslx+../trash/hgSs/hgSs_genome_362e_517790.fa&hgsid=136019191> details <http://genome.ucsc.edu/cgi-bin/hgc?o=20140803&g=htcUserAli&i=../trash/hgSs/hgSs_genome_362e_517790.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_362e_517790.fa+NM_182762&c=chr7&l=20140803&r=20147092&db=hg18&hgsid=136019191> NM_182762 6274 1 6276 6276 100.0% 7 - 20140804 20147092 6289 browser <http://genome.ucsc.edu/cgi-bin/hgTracks?position=chr11:116084102-116084394&db=hg18&ss=../trash/hgSs/hgSs_genome_362e_517790.pslx+../trash/hgSs/hgSs_genome_362e_517790.fa&hgsid=136019191> details <http://genome.ucsc.edu/cgi-bin/hgc?o=116084101&g=htcUserAli&i=../trash/hgSs/hgSs_genome_362e_517790.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_362e_517790.fa+NM_182762&c=chr11&l=116084101&r=116084394&db=hg18&hgsid=136019191> NM_182762 248 1975 2259 6276 94.0% 11 - 116084102 116084394 293 browser <http://genome.ucsc.edu/cgi-bin/hgTracks?position=chr7:16094573-16094880&db=hg18&ss=../trash/hgSs/hgSs_genome_362e_517790.pslx+../trash/hgSs/hgSs_genome_362e_517790.fa&hgsid=136019191> details <http://genome.ucsc.edu/cgi-bin/hgc?o=16094572&g=htcUserAli&i=../trash/hgSs/hgSs_genome_362e_517790.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_362e_517790.fa+NM_182762&c=chr7&l=16094572&r=16094880&db=hg18&hgsid=136019191> NM_182762 241 1958 2259 6276 92.3% 7 - 16094573 16094880 308 browser <http://genome.ucsc.edu/cgi-bin/hgTracks?position=chr9:130722169-130722454&db=hg18&ss=../trash/hgSs/hgSs_genome_362e_517790.pslx+../trash/hgSs/hgSs_genome_362e_517790.fa&hgsid=136019191> details <http://genome.ucsc.edu/cgi-bin/hgc?o=130722168&g=htcUserAli&i=../trash/hgSs/hgSs_genome_362e_517790.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_362e_517790.fa+NM_182762&c=chr9&l=130722168&r=130722454&db=hg18&hgsid=136019191> NM_182762 236 1978 2254 6276 93.5% 9 + 130722169 130722454 286 browser <http://genome.ucsc.edu/cgi-bin/hgTracks?position=chr14:68970544-69164800&db=hg18&ss=../trash/hgSs/hgSs_genome_362e_517790.pslx+../trash/hgSs/hgSs_genome_362e_517790.fa&hgsid=136019191> details <http://genome.ucsc.edu/cgi-bin/hgc?o=68970543&g=htcUserAli&i=../trash/hgSs/hgSs_genome_362e_517790.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_362e_517790.fa+NM_182762&c=chr14&l=68970543&r=69164800&db=hg18&hgsid=136019191> NM_182762 228 2767 3077 6276 87.2% 14 + 68970544 69164800 194257 browser <http://genome.ucsc.edu/cgi-bin/hgTracks?position=chr15:40192421-40192715&db=hg18&ss=../trash/hgSs/hgSs_genome_362e_517790.pslx+../trash/hgSs/hgSs_genome_362e_517790.fa&hgsid=136019191> details <http://genome.ucsc.edu/cgi-bin/hgc?o=40192420&g=htcUserAli&i=../trash/hgSs/hgSs_genome_362e_517790.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_362e_517790.fa+NM_182762&c=chr15&l=40192420&r=40192715&db=hg18&hgsid=136019191> NM_182762 225 1975 2259 6276 91.9% 15 + 40192421 40192715 295 browser <http://genome.ucsc.edu/cgi-bin/hgTracks?position=chr16:84335668-84335949&db=hg18&ss=../trash/hgSs/hgSs_genome_362e_517790.pslx+../trash/hgSs/hgSs_genome_362e_517790.fa&hgsid=136019191> details <http://genome.ucsc.edu/cgi-bin/hgc?o=84335667&g=htcUserAli&i=../trash/hgSs/hgSs_genome_362e_517790.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_362e_517790.fa+NM_182762&c=chr16&l=84335667&r=84335949&db=hg18&hgsid=136019191> NM_182762 224 1986 2259 6276 92.5% 16 + 84335668 84335949 282 browser <http://genome.ucsc.edu/cgi-bin/hgTracks?position=chr19:8494734-8495483&db=hg18&ss=../trash/hgSs/hgSs_genome_362e_517790.pslx+../trash/hgSs/hgSs_genome_362e_517790.fa&hgsid=136019191> details <http://genome.ucsc.edu/cgi-bin/hgc?o=8494733&g=htcUserAli&i=../trash/hgSs/hgSs_genome_362e_517790.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_362e_517790.fa+NM_182762&c=chr19&l=8494733&r=8495483&db=hg18&hgsid=136019191> NM_182762 212 2776 3063 6276 88.6% 19 - 8494734 8495483 750 browser <http://genome.ucsc.edu/cgi-bin/hgTracks?position=chr2:43841003-43841454&db=hg18&ss=../trash/hgSs/hgSs_genome_362e_517790.pslx+../trash/hgSs/hgSs_genome_362e_517790.fa&hgsid=136019191> details <http://genome.ucsc.edu/cgi-bin/hgc?o=43841002&g=htcUserAli&i=../trash/hgSs/hgSs_genome_362e_517790.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_362e_517790.fa+NM_182762&c=chr2&l=43841002&r=43841454&db=hg18&hgsid=136019191> NM_182762 210 2772 3074 6276 84.9% 2 + 43841003 43841454 452 browser <http://genome.ucsc.edu/cgi-bin/hgTracks?position=chr14:23473150-23473433&db=hg18&ss=../trash/hgSs/hgSs_genome_362e_517790.pslx+../trash/hgSs/hgSs_genome_362e_517790.fa&hgsid=136019191> details <http://genome.ucsc.edu/cgi-bin/hgc?o=23473149&g=htcUserAli&i=../trash/hgSs/hgSs_genome_362e_517790.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_362e_517790.fa+NM_182762&c=chr14&l=23473149&r=23473433&db=hg18&hgsid=136019191> NM_182762 208 2782 3064 6276 87.0% 14 - 23473150 23473433 284 browser <http://genome.ucsc.edu/cgi-bin/hgTracks?position=chr11:66605236-66605548&db=hg18&ss=../trash/hgSs/hgSs_genome_362e_517790.pslx+../trash/hgSs/hgSs_genome_362e_517790.fa&hgsid=136019191> details <http://genome.ucsc.edu/cgi-bin/hgc?o=66605235&g=htcUserAli&i=../trash/hgSs/hgSs_genome_362e_517790.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_362e_517790.fa+NM_182762&c=chr11&l=66605235&r=66605548&db=hg18&hgsid=136019191> NM_182762 206 2773 3075 6276 85.9% 11 - 66605236 66605548 313 browser <http://genome.ucsc.edu/cgi-bin/hgTracks?position=chr7:36341922-36342215&db=hg18&ss=../trash/hgSs/hgSs_genome_362e_517790.pslx+../trash/hgSs/hgSs_genome_362e_517790.fa&hgsid=136019191> details <http://genome.ucsc.edu/cgi-bin/hgc?o=36341921&g=htcUserAli&i=../trash/hgSs/hgSs_genome_362e_517790.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_362e_517790.fa+NM_182762&c=chr7&l=36341921&r=36342215&db=hg18&hgsid=136019191> NM_182762 205 2782 3075 6276 90.6% 7 - 36341922 36342215 294 browser <http://genome.ucsc.edu/cgi-bin/hgTracks?position=chr17:17958281-17958582&db=hg18&ss=../trash/hgSs/hgSs_genome_362e_517790.pslx+../trash/hgSs/hgSs_genome_362e_517790.fa&hgsid=136019191> details <http://genome.ucsc.edu/cgi-bin/hgc?o=17958280&g=htcUserAli&i=../trash/hgSs/hgSs_genome_362e_517790.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_362e_517790.fa+NM_182762&c=chr17&l=17958280&r=17958582&db=hg18&hgsid=136019191> NM_182762 205 2767 3066 6276 85.6% 17 + 17958281 17958582 302 However, when I did local BLAST research, I can not locate my query in the same location in chromosome data (I downloaded Genome data from http://hgdownload.cse.ucsc.edu/goldenPath/hg18/bigZips/ chromFa.zip<http://hgdownload.cse.ucsc.edu/goldenPath/hg18/bigZips/chromFa.zip>. My local blast result showed that there is no perfect match in chromosome to my query). Furthermore, I tried to follow the BLAT result and locate my query in chr7.fa manually. I found the sequence in position 20140804 is : TTGATTTTTCAATGACTCACTCTATTTTCATGAACAAGTTAAATGCC CCAGTAAATTCCATGTATTGAGTTTAAGTGAGCATATAAACATTAGGGAC ATTTAAAATCTACTTCCAGTCACAAAAGGGCAGAGTCTTGATATCTTTAA GAACAGAGAAAAGGAAGCCATAGATTCTTCCAATCACCCAAAGAAAAACA ATTAACAAGGAAATGATGGCAGAGGATAAAACGTGATACGTCAATCTCAA AGTGAGATGGTTCAGCTTGCCACCTCTTCTCAGTCACCATCTCTTTAAAT GTGGAATATGATCCTTAGAAAGAACATCCGATCACCTTATTAACACTTTC TAATTCTACAGTGAAAGCAGGGCATATAGATAGCTGTATTGATCACATTG ATTAAAAACATTTTTTTCAATGGGAAAAAATACATTTAACAAGAAATTCA ACAAATAACACACTAGGGAAAACAAGGCTTTTTCCGAAGATATTTTACAG AAACAAATGCAATGTTACATATATTTTGTAAAATTATCTTAAAATTATAC TGAATACATGTCCCAAATTATTGTTAACCTATTTTTATTCAAATATGTTT ATGCTTTAAATGAAACACAGAGATTTTAATTAGTTTCACAGTCAAAATTA TTTTTGTAGGCCTTTATTAACTCATGAAAAGTTCACTTGCTATAAATAGA GCCTTAACATAAAGTGATTTTCGGTTCTTTAGCACAATTTTTAAAACAAT TTCTCCAACAGAATTAAGTGAAATCTCATTTATCTTAAAGCAAATTAGAG Obviously, this sequence is different from my query. So, my question is: Did I download the same version of genome data as used in BLAT. If possible, could you please help me to explain why my local BLAST result is different from your BLAT result? If I used the wrong data, could you please tell me where to download the right one. Thanks beforehand. Regards Wayne _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
