Hi, I have a bed file in which the coordinates for random chromosomes are given by the contig instead, such as NT_166307 or NT_166038 instead of chr7_random. For instance:
NT_166307 162 1062 NT_166307 685 1608 NT_166307 1253 2173 The help files for BED format claim that this is possible, and I know these contig-based coordinates exist because I can paste them directly into the genome browser and they work. But trying to load the bed file gives me the "NT_166307 not a chromosome (note: chrom names are case sensitive)" error. I see that this problem has come up before in the mailing list archives (April 8 2002) and supposedly it was fixed... So what am I doing wrong? Thanks, Ariel _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
