Hi Harsh, Thank you for your positive comments about the Genome Browser. We are pleased that you have found it to be such a useful resource.
You can obtain the gene sequence including the 10,000 bases upstream and downstream using the Table Browser. Because there is too much data to have the entire genome in a single file, you will need to obtain the data one chromosome at a time for each assembly. Make the following additions to your Table Browser selections. For "region:" select "position" and enter a chromosome, e.g. chr1. Also, find the field labeled, "output file:" and enter the name of the file that will be created (e.g. mouseChr1). Repeat for each chromosome. Please don't hesitate to contact the mail list if you require further assistance. Katrina Learned UCSC Genome Bioinformatics Group Dweep, Harsh wrote: > Dear UCSC Team, > > > > First of all, I would like to congratulate you for providing such a huge > genomic database for public use. It is really a great work to compile all > genome together so beautifully that a user can get everything like SNP, > homologous, PDB etc i.e. complete information. > > > > I would like to introduce myself; I am student of Heidelberg University. > > I would like to ask you one query about all genes of human, mouse and rat. > > > > I would like to download upstream10000 bases as well as downstream10000 > bases of all genes of human, mouse and rat. > > > > 1. I had visited ftp site but the maximum upstream sequences are available > of 5000 bases. > > > > 2. I had tried Table Browser. But It is also not possible from the Table > Browser due to exceed number of queries. > > > > > > Could you please tell me some way to download upstream10000 bases as well as > downstream10000 bases of all genes of human, mouse and rat?? > > > > I will be highly oblige and grateful of you for your kind suggestions and > help. > > > > > > I am waiting for a positive and kind reply. > > > > > > With Sincere Regards > > > > Harsh Dweep > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
