Maleeha, Have you seen the details page for the SNP track? Click on the blue-or-grey box on the left-hand side of the display to get to it, or click here: http://genome.ucsc.edu/cgi-bin/hgTrackUi?g=snp129
You can see that by default, the blue colored SNPs are "untranslated", and the red colored snips indicate "Splice site". These colors may be changed by the user. I hope this helps to get you started, Kayla Smith UCSC Genome Bioinformatics Group ----- "maleeha azam" <[email protected]> wrote: > Dear UCSC > I am a PhD students in the field of genetics. I am having some > confusion in > knowing what the coloured SNPs text mean. Some SNPs are coloured Blue > and > some as Red, My question is what do we predict about the coloured > SNPs > especially when they are inidcated red in the exonic sequence. > Please let me know about it. > thank you > Maleeha > > -- > Maleeha Azam > PhD Scholar > Department of BioSciences > COMSATS Institute > of Information Technology > Islamabad > Pakistan > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
