Hello Rafael, You can do this using the Table Browser. Click the "Tables" link in the blue bar at the top of the page, and select the RefSeq Genes track from the drop-down menus. Then find the "identifiers (names/accessions):" line and either paste or upload your list of RefSeq genes. For "output format" choose "sequence". Since you will be generating a large file, I recommend entering a name for the output file, so that you can save the results as a file (rather than getting the results in your web browser screen). When you hit "submit", you will be given the option to choose genomic sequence, and on the page following that, you can select the regions to be retrieved (UTRs, introns, exons, etc.). Hit "get sequence" to generate your file.
I hope this is helpful. If you are interested in watching a brief tutorial on using the Table Browser, please see the Open Helix training materials on this page: http://www.openhelix.com/downloads/ucsc/ucsc_home.shtml If you have further questions, please feel free to email us again at [email protected]. -- Brooke Rhead UCSC Genome Bioinformatics Group Subject: Genomic sequence RefSeq and exon/introns/utr... From: "Rafael DE CID IBEAS" <[email protected]> Date: Fri, 10 Jul 2009 11:13:06 +0200 To: "Rafael DE CID IBEAS" <[email protected]>, <[email protected]> To: "Rafael DE CID IBEAS" <[email protected]>, <[email protected]> I need to download the Genomic Sequence from a large list of RefSeq genes ( all different RefSeq references for a gene, and for all exons introns, CDs and UTRs). I wonder if a batch procedure could be applied to obtain all the data. Thank you in advance Rafael de Cid, Ph D Chargé de recherche Lab DDC [email protected] Logo_150px.jpg GENETHON 1bis, Rue de l’Internationale - 91000 EVRY /Tél : //01 69 47 28 00 - Fax : 01 60 77 86 98/ http://www.genethon.fr <dhtmled0://exchweb/bin/redir.asp?URL=http://www.genethon.fr/> On 07/10/09 02:13, Rafael DE CID IBEAS wrote: > Les informations contenues dans ce message �lectronique ont un caract�re > strictement confidentiel et sont exclusivement destin�es � la personne � > laquelle il est adress�. Toute divulgation, utilisation, diffusion ou > reproduction de tout ou partie de ce message, ou des informations qu'il > contient, est interdite. Si vous n'�tes pas destinataire de ce message, merci > d'en avertir imm�diatement l'exp�diteur et de d�truire le message. > ******************************************************************************************************************************** > The information transmitted is intended only for the person or entity to > which it is addressed and may contain confidential and/or privileged > material. Any review, retransmission, dissemination or other use of, or > taking of any action in reliance upon, this information by persons or > entities other than the intended recipient is prohibited. If you received > this in error, please contact the sender and delete the material from any > computer. > > > ------------------------------------------------------------------------ > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
