Hello Rafael, Concerning the RefSeq Genes track:
The data is contained in the track's tables. Go into the assembly of interest and click on the track name RefSeq Genes to view the methods, credits, primary table name, links, and last datau update (nightly). Using the Table broswer: 1) set clade, genome, assembly, group=Gene and Gene Prediction, table=refGene (default). 2) filter by region, identifiers (upload list), custom track, or extract the whole table. 3) several output options, including a direct download of all or to link with associated tables. Using ftp: 1) Files will be named the same as the files in the Table Browser (above). Locate the data in the goldenPath/<assembly>/database directory. Some help links: http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#TableBrowser http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#CustomTracks Thank you, Jennifer Jackson UCSC Genome Bioinformatics Group ps: Your earlier messages bounced, but we were able to recover them. ---------------------------------------------------- Subject: Genomic sequence RefSeq and exon/introns/utr... From: "Rafael DE CID IBEAS" <[email protected]> Date: Fri, 10 Jul 2009 11:13:06 +0200 To: "Rafael DE CID IBEAS" <[email protected]>, <[email protected]> To: "Rafael DE CID IBEAS" <[email protected]>, <[email protected]> I need to download the Genomic Sequence from a large list of RefSeq genes ( all different RefSeq references for a gene, and for all exons introns, CDs and UTRs). I wonder if a batch procedure could be applied to obtain all the data. Thank you in advance Rafael de Cid, Ph D Chargé de recherche Lab DDC [email protected] Logo_150px.jpg GENETHON 1bis, Rue de l’Internationale - 91000 EVRY /Tél : //01 69 47 28 00 - Fax : 01 60 77 86 98/ http://www.genethon.fr <dhtmled0://exchweb/bin/redir.asp?URL=http://www.genethon.fr/> ------------------------------------------------------------------------ Les informations contenues dans ce message �lectronique ont un caract�re strictement confidentiel et sont exclusivement destin�es � la personne � laquelle il est adress�. Toute divulgation, utilisation, diffusion ou reproduction de tout ou partie de ce message, ou des informations qu'il contient, est interdite. Si vous n'�tes pas destinataire de ce message, merci d'en avertir imm�diatement l'exp�diteur et de d�truire le message. ******************************************************************************************************************************** The information transmitted is intended only for the person or entity to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipient is prohibited. If you received this in error, please contact the sender and delete the material from any computer. ------------------------------------------------------------------------ Subject: confirm 5006ea1d106add6df7b6f9dc708390b1bccb8de2 From: [email protected] If you reply to this message, keeping the Subject: header intact, Mailman will discard the held message. Do this if the message is spam. If you reply to this message and include an Approved: header with the list password in it, the message will be approved for posting to the list. The Approved: header can also appear in the first line of the body of the reply. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
