Hello Jiang, You can follow the analogous steps for mouse as outlined in this previously answered mailing list question about coordinates for 3' UTRs in human:
https://lists.soe.ucsc.edu/pipermail/genome/2008-December/017718.html i.e. you will want to go to the mouse downloads page: ftp://hgdownload.cse.ucsc.edu/goldenPath/mm9/database/ If you interested in the UCSC genes track in particular, you will want the "knownGene*" files. Hopefully this information was helpful and answers your question. If you have further questions or require clarification feel free to contact the mailing list at [email protected]. Regards, Pauline Fujita UCSC Genome Bioinformatics Group http://genome.ucsc.edu chunjiang he wrote: > Hi all, > > I want to ask if there has a 3'UTR database in UCSC annotation files. > Because I am looking for the genomic location of 3'UTR of all mouse genes. > Or can you tell me another method to get the info. > Thanks. > > Jiang > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
