Thanks Pauline, I am sorry I can't find the file including the 3'UTR coordinates in ftp://hgdownload.cse.ucsc.edu/goldenPath/mm9/database/ I see the knownGene or RefGene files but I don't find the 3'utr coordinates info there. Can you guide me more? Thanks very much.
Jiang On Tue, Jul 14, 2009 at 5:09 PM, Pauline Fujita <[email protected]>wrote: > Hello Jiang, > > You can follow the analogous steps for mouse as outlined in this previously > answered mailing list question about coordinates for 3' UTRs in human: > > https://lists.soe.ucsc.edu/pipermail/genome/2008-December/017718.html > > i.e. you will want to go to the mouse downloads page: > ftp://hgdownload.cse.ucsc.edu/goldenPath/mm9/database/ > > If you interested in the UCSC genes track in particular, you will want the > "knownGene*" files. > > Hopefully this information was helpful and answers your question. If you > have further questions or require clarification feel free to contact the > mailing list at [email protected]. > > Regards, > > Pauline Fujita > UCSC Genome Bioinformatics Group > http://genome.ucsc.edu > > chunjiang he wrote: > >> Hi all, >> >> I want to ask if there has a 3'UTR database in UCSC annotation files. >> Because I am looking for the genomic location of 3'UTR of all mouse genes. >> Or can you tell me another method to get the info. >> Thanks. >> >> Jiang >> _______________________________________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome >> > > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
