Hello, This is likely related to updates between our version of the track and the data at NCBI.
For apiMel2, the NCBI Gene Model track's description page notes that: Data last updated: 2005-05-26 There may have been updates since then - check at NCBI. If you want to, the entire current dataset could be extracted from NCBI, formatted as a custom track, and uploaded. Instructions for data formats, custom tracks, and other tools are in our FAQ. If you need help locating something specific, please let us know. Thanks, Jen ------------------------------------------------ Jennifer Jackson UCSC Genome Bioinformatics Group ----- [email protected] wrote: > From: [email protected] > To: [email protected] > Sent: Tuesday, August 18, 2009 9:18:44 AM GMT -08:00 US/Canada Pacific > Subject: [Genome] question about honey bee NCBI gene track > > Dear Genome: > > I am using UCSC genome browser to do some analysis about honey > bee(A.mellifera) genome. For my purpose, I use the NCBI Genes track > under A.mellifera genome. However, when I manually check the sequence > for a same refseq ID between UCSC and NCBI, I found there were always > some difference among them. The attach file is a sequence alignment > for XM_392354 between the resources I mentioned above. Because my > analysis is very sensitive to the length of gene. Could you tell me > why there is difference between the same refseq gene from different > resources and what resource is the most current one? Thank you very > much > > Jia Zeng > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
