Hi UCSC, I am using BLAT to align cDNA with genome, and want to filter the cDNA alignments using pslCDnaFilter, so as to report only the highest-scoring spliced alignment(s) for each cDNA. I've downloaded the blatSrc from:http://users.soe.ucsc.edu/~kent/src/, and all of the sources of pslCDnaFilter from: http://hgwdev.cse.ucsc.edu/~kent/src/unzipped/hg/pslCDnaFilter/. After unzipping the blatSrc, I moved pslCDnaFilter sources to blatSrc/hg/pslCDnaFilter.
However, when typing 'make', primary executable programs in blatSrc, such as blat, pslPretty, were installed and ran successfully, except those with pslCDnaFilter. The false information is echo '/* GENERATED CODE, DO NOT EDIT */' > usage.msg.tmp /home/zwq/bin/i686/stringify usage.txt >> usage.msg.tmp /bin/sh: /home/zwq/bin/i686/stringify: Permission denied make[1]: *** [usage.msg] 错误 126 Then, I tried z...@zwq-desktop:~/blatSrc$ wget http://hgwdev.cse.ucsc.edu/~kent/src/unzipped/hg/pslCDnaFilter/pslCDnaFilter z...@zwq-desktop:~/blatSrc$ chmod 777 pslCDnaFilter z...@zwq-desktop:~/blatSrc$ sudo ./pslCDnaFilter ./pslCDnaFilter: 1: ELF: not found ./pslCDnaFilter: 2: ????:: not found ./pslCDnaFilter: 2: ???e??????t{?k?w?FF??F?B!8?Y???D?7????Ks??*: not found ./pslCDnaFilter: 1: Syntax error: Unterminated quoted string I have noticed that the update time of the latest version is 19/08/2009. Maybe there are still some bugs existing. I hope you guys direct me how to install and run pslCDnaFilter successfully as soon as possible. Thanks for your help. Wenqian Zhang, Northwest A&F Univesity This email and any files transmitted with it are confidential and intended solely for the use of the individual or entity to whom they are addressed. If you have received this email in error please notify the originator of the message. Any views expressed in this message are those of the individual sender. This message has been scanned for viruses and spam by SurfControl RiskFilter - E-mail. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
