Good Morning Alex: You can make hgWiggle output 1-relative coordinates with the argument -lift=1
For example hgWiggle -lift=1 -db=hg19 -position=chrM:1-20 gc5Base # output date: 2010-09-15 18:21:29 UTC # chrom specified: chrM # position specified: 1-20 # This data has been compressed with a minor loss in resolution. # (Worst case: 0.78125) variableStep chrom=chrM span=5 1 39.3701 6 59.8425 11 39.3701 16 59.8425 Wiggle ASCII data of this type that is used for input as custom tracks must *always* be 1-relative. Otherwise it would be 1 position off. --Hiram Alex Reynolds wrote: > Is there a way to determine if coordinates in a wiggle (.wig) file should be > 1-based or 0-based? _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
